Stem-loop cpa-MIR390a

Accession

MI0026364

Description

Carica papaya cpa-MIR390a precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

3 open access papers mention cpa-MIR390a
(8 sentences)

Sequence

AAGCUCAGGAGGGAUAGCGCCaugaacucuauaucuauauauauauauauauauauauauguaaaaucacgauucaugaguaguggcgcuaucuauccugaguuuca
((((((((((.((((((((((((..((((...(((((((((((((((....)))))))))))).......)))....)))).)))))))))))).))))))))))..

Structure

--          G            ga    -uau   -------            u 
  AAGCUCAGGA GGAUAGCGCCau  acuc    auc       uauauauauaua a
  |||||||||| ||||||||||||  ||||    |||       ||||||||||||  
  uuugaguccu ucuaucgcggug  ugag    uag       auguauauauau u
ac          a            -a    uacu   cacuaaa            a 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR390a

• Accession: MIMAT0031812
• Description: Carica papaya cpa-miR390a mature miRNA
• Sequence: 1 - AAGCUCAGGAGGGAUAGCGCC - 21
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682