Stem-loop cpa-MIR390b

Accession

MI0026365

Description

Carica papaya cpa-MIR390b precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

3 open access papers mention cpa-MIR390b
(8 sentences)

Sequence

AAGCUCAGGAGGGAUAGCGCCauggcgggucuugaaucuugaucuucauuugcgcuauccauccugaguuuca
((((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).))))))))))..

Structure

--          G         -C    c     uug 
  AAGCUCAGGA GGAUAGCGC  augg ggguc   a
  |||||||||| |||||||||  |||| |||||   a
  uuugaguccu ccuaucgcg  uacu ucuag   u
ac          a         uu    -     uuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR390b

• Accession: MIMAT0031813
• Description: Carica papaya cpa-miR390b mature miRNA
• Sequence: 1 - AAGCUCAGGAGGGAUAGCGCC - 21
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682