miRBase entry: cpa-MIR393

Stem-loop cpa-MIR393


Accession
MI0026366
Description
Carica papaya cpa-MIR393 precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
2 open access papers mention cpa-MIR393
(4 sentences)

Sequence

UCCAAAGGGAUCGCAUUGAUCCuuuacaaggugaaagcaaucuauauauauauauguguguguguguauauaagucugucuccuguauauauagaguuuaggaucaugcuaucccuuuggauu
(((((((((((.((((.((((((..((.(((.((.((..((.(((((((((((((....))))))))))))).)))).)).)))...........))..)))))))))).)))))))))))..

Structure
--           C    U      uu  ----------a   u  a  ca  c             g 
  UCCAAAGGGAU GCAU GAUCCu  ac           agg ga ag  au uauauauauauau u
  ||||||||||| |||| ||||||  ||           ||| || ||  || |||||||||||||  
  agguuucccua cgua cuagga  ug           ucc cu uc  ug auauaugugugug g
uu           u    -      uu  agauauauaug   u  g  --  a             u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cpa-miR393

Accession MIMAT0031814
Description Carica papaya cpa-miR393 mature miRNA
Sequence 1 - UCCAAAGGGAUCGCAUUGAUCC - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682