miRBase entry: cpa-MIR398

Stem-loop cpa-MIR398


Accession
MI0026378
Description
Carica papaya cpa-MIR398 precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
1 open access papers mention cpa-MIR398
(11 sentences)

Sequence

GGGACGACAUGAGAUCACACGaaaggaagcccgcagaaggacaaaaccguaaauguaaucuggugguauaauccucugugcuucguguguucucaggucgccccug
(((.((((.(((((.(((((((.....(((..(((((.(((....((((..............))))....)))))))))))))))))).))))).)))).)))..

Structure
--   A    A     U       aagga   cc     a   caaa    uaaaug 
  GGG CGAC UGAGA CACACGa     agc  gcaga gga    accg      u
  ||| |||| ||||| |||||||     |||  ||||| |||    ||||       
  ccc gcug acucu gugugcu     ucg  ugucu ccu    uggu      a
gu   c    g     u       -----   --     -   aaua    ggucua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cpa-miR398

Accession MIMAT0031826
Description Carica papaya cpa-miR398 mature miRNA
Sequence 1 - GGGACGACAUGAGAUCACACG - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682