miRBase entry: cpa-MIR477

Stem-loop cpa-MIR477


Accession
MI0026380
Description
Carica papaya cpa-MIR477 precursor miRNA


Sequence

ucccucaaaggcuuccaguauuucagccaauuauuaccauacauacauaugaaguaaugaaaauguguauggaaauAUUGGAGGACUUUGGGGGAGC
((((((((((.(((((((((((((.((((.(((((((((((......))))..)))))))...)).))...))))))))))))).))))))))))..

Structure
--          g             --a  -  --a       --    ca 
  ucccucaaag cuuccaguauuuc   gc ca   uuauuac  caua  u
  |||||||||| |||||||||||||   || ||   |||||||  ||||   
  AGGGGGUUUC GGAGGUUAuaaag   ug gu   aguaaug  guau  a
CG          A             gua  u  aaa       aa    ac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cpa-miR477

Accession MIMAT0031828
Description Carica papaya cpa-miR477 mature miRNA
Sequence 77 - AUUGGAGGACUUUGGGGGAGC - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682