miRBase entry: lus-MIR171j

Stem-loop lus-MIR171j


Accession
MI0026409
Description
Linum usitatissimum lus-MIR171j precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
3 open access papers mention lus-MIR171j
(6 sentences)

Sequence

gguauuggcgcgccucaaucggaaggcauggcuaauauacauuuaccagaagcuggaugaccaaaugaguaaauauugauaagauugaugaugauuaauuagccauguggauuuuUGAUUGAGCCGCGUCAAUAUC
((((((((((((.(((((((((((((((((((((((....((((((((.....(((....)))..)).))))))...........((((....)))))))))))))))...)))))))))))).))))))))))))

Structure
            c            ---           -------------------auac      -  gaagc   a 
gguauuggcgcg cucaaucggaag   gcauggcuaau                       auuuac ca     ugg u
|||||||||||| ||||||||||||   |||||||||||                       |||||| ||     |||  
CUAUAACUGCGC GAGUUAGUuuuu   uguaccgauua                       uaaaug gu     acc g
            C            agg           auuaguaguaguuagaauaguua      a  ---aa   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR171j

Accession MIMAT0031857
Description Linum usitatissimum lus-miR171j mature miRNA
Sequence 116 - UGAUUGAGCCGCGUCAAUAUC - 136
Evidence not_experimental

References

  1. PubMed ID: 22841625
    Identification and characterization of miRNAs and their potential targets in flax
    "Neutelings G, Fenart S, Lucau-Danila A, Hawkins S"
    "J Plant Physiol (2012) 169:1754-1766