miRBase entry: ssa-let-7c-1

Stem-loop ssa-let-7c-1


Accession
MI0026423
Description
Salmo salar ssa-let-7c-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7c-1
(5 sentences)

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaaugacacccuaggaguuaaCUGUACAACCUUCUAGCUUUCC
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure
--U   G   U             uag   ga ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   UUC AUC UCCAACAUGUCaa   uug  g  c
CCU   G   U             ---   ag au 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-let-7c-5p

Accession MIMAT0032265
Description Salmo salar ssa-let-7c-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7c-3p

Accession MIMAT0032266
Description Salmo salar ssa-let-7c-3p mature miRNA
Sequence 46 - CUGUACAACCUUCUAGCUUUCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482