Stem-loop ssa-mir-106a-1

Accession

MI0026438

Description

Salmo salar ssa-mir-106a-1 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

UAAAGUGCUUACAGUGCAGGUAaugguuauguccuaccuaCCGCAAUGUGAGCACUUCUGUC
..(((((((((((.(((.((((..(((........)))))))))).))))))))))).....

Structure

---UA           G   A    au   uau 
     AAGUGCUUACA UGC GGUA  ggu   g
     ||||||||||| ||| ||||  |||    
     UUCACGAGUGU ACG CCau  cca   u
CUGUC           A   -    --   ucc 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-106a-5p

• Accession: MIMAT0032286
• Description: Salmo salar ssa-miR-106a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-106a-3p

• Accession: MIMAT0032287
• Description: Salmo salar ssa-miR-106a-3p mature miRNA
• Sequence: 41 - CCGCAAUGUGAGCACUUCUGUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482