Stem-loop ssa-mir-10a-2

Accession

MI0026443

Description

Salmo salar ssa-mir-10a-2 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

2 open access papers mention ssa-mir-10a-2
(7 sentences)

Sequence

UACCCUGUAGAUCCGGAUUUGUgugaacagacucacggucaCAAAUUCAUAUCUAAGGGAGU
..((((.(((((..((((((((((((......))))....))))))))..)))))))))...

Structure

-UA    G     CC        ----    ac 
   CCCU UAGAU  GGAUUUGU    guga  a
   |||| |||||  ||||||||    ||||   
   GGGA AUCUA  CUUAAACa    cacu  g
UGA    -     UA        cugg    ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-10a-5p

• Accession: MIMAT0032292
• Description: Salmo salar ssa-miR-10a-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAUCCGGAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-10a-2-3p

• Accession: MIMAT0032294
• Description: Salmo salar ssa-miR-10a-2-3p mature miRNA
• Sequence: 42 - CAAAUUCAUAUCUAAGGGAGU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482