miRBase entry: ssa-mir-10b-1

Stem-loop ssa-mir-10b-1


Accession
MI0026444
Description
Salmo salar ssa-mir-10b-1 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention ssa-mir-10b-1
(9 sentences)

Sequence

UACCCUGUAGAACCGAAUUUGUguuaauagauaacaaucgCAAGUACGUCUCUACAGGAAUA
...((((((((..((.(((((((...............))))))).))..))))))))....

Structure
-UAC        AC  A       uuaaua 
    CCUGUAGA  CG AUUUGUg      g
    ||||||||  || |||||||      a
    GGACAUCU  GC UGAACgc      u
AUAA        CU  A       uaacaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-10b-5p

Accession MIMAT0032295
Description Salmo salar ssa-miR-10b-5p mature miRNA
Sequence 1 - UACCCUGUAGAACCGAAUUUGU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-10b-3p

Accession MIMAT0032296
Description Salmo salar ssa-miR-10b-3p mature miRNA
Sequence 41 - CAAGUACGUCUCUACAGGAAUA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482