miRBase entry: ssa-mir-10b-3

Stem-loop ssa-mir-10b-3


Accession
MI0026446
Description
Salmo salar ssa-mir-10b-3 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention ssa-mir-10b-3
(9 sentences)

Sequence

UACCCUGUAGAACCGAAUUUGUgugauaaaacaacagucACAGAUUCGAUUCUAGGGGAGU
...(((.(((((.((((((((((...............)))))))))).))))).)))...

Structure
UAC   G     C          ugauaa 
   CCU UAGAA CGAAUUUGUg      a
   ||| ||||| ||||||||||      a
   GGG AUCUU GCUUAGACAc      c
UGA   G     A          ugacaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-10b-5p

Accession MIMAT0032295
Description Salmo salar ssa-miR-10b-5p mature miRNA
Sequence 1 - UACCCUGUAGAACCGAAUUUGU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-10b-3-3p

Accession MIMAT0032298
Description Salmo salar ssa-miR-10b-3-3p mature miRNA
Sequence 40 - ACAGAUUCGAUUCUAGGGGAGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482