miRBase entry: ssa-mir-10d-1

Stem-loop ssa-mir-10d-1


Accession
MI0026448
Description
Salmo salar ssa-mir-10d-1 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention ssa-mir-10d-1
(6 sentences)

Sequence

CACCCUGUAGAACCGAAUUUGUguuuacaauuaacaaccgCAAAUUCGCCUCUACGGGA
...((((((((..((((((((((...............))))))))))..)))))))).

Structure
CAC        AC          uuuaca 
   CCUGUAGA  CGAAUUUGUg      a
   ||||||||  ||||||||||      u
   GGGCAUCU  GCUUAAACgc      u
--A        CC          caacaa 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-10d-5p

Accession MIMAT0032299
Description Salmo salar ssa-miR-10d-5p mature miRNA
Sequence 1 - CACCCUGUAGAACCGAAUUUGU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-10d-3p

Accession MIMAT0032300
Description Salmo salar ssa-miR-10d-3p mature miRNA
Sequence 41 - CAAAUUCGCCUCUACGGGA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482