miRBase entry: ssa-mir-122-2

Stem-loop ssa-mir-122-2


Accession
MI0026451
Description
Salmo salar ssa-mir-122-2 precursor miRNA
Gene family
MIPF0000095; mir-122

Literature search
1 open access papers mention ssa-mir-122-2
(38 sentences)

Sequence

UGGAGUGUGACAAUGGUGUUUGuguucucugcaaucaAACGCCAUUAUCACACUAAAUA
...(((((((.((((((((((((((.....)))..))))))))))).))))))).....

Structure
--UGG       C           --   u 
     AGUGUGA AAUGGUGUUUG  ugu c
     ||||||| |||||||||||  ||| u
     UCACACU UUACCGCAAac  acg c
AUAAA       A           ua   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-122-5p

Accession MIMAT0032301
Description Salmo salar ssa-miR-122-5p mature miRNA
Sequence 1 - UGGAGUGUGACAAUGGUGUUUG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-122-2-3p

Accession MIMAT0032303
Description Salmo salar ssa-miR-122-2-3p mature miRNA
Sequence 38 - AACGCCAUUAUCACACUAAAUA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482