miRBase entry: ssa-mir-130a-2

Stem-loop ssa-mir-130a-2


Accession
MI0026469
Description
Salmo salar ssa-mir-130a-2 precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

ACUCUUUCCCUGUUGCACUACUgugggagcuguagcuagCAGUGCAAUAAUGAAAGGGCAUC
.(((((((..(((((((((.((.....(((....))))).)))))))))..)))))))....

Structure
---A       CC         A  guggg   u 
    CUCUUUC  UGUUGCACU CU     agc g
    |||||||  ||||||||| ||     |||  
    GGGAAAG  AUAACGUGA ga     ucg u
CUAC       UA         C  -----   a 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-130a-5p

Accession MIMAT0032321
Description Salmo salar ssa-miR-130a-5p mature miRNA
Sequence 1 - ACUCUUUCCCUGUUGCACUACU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-130a-2-3p

Accession MIMAT0032323
Description Salmo salar ssa-miR-130a-2-3p mature miRNA
Sequence 40 - CAGUGCAAUAAUGAAAGGGCAUC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482