miRBase entry: ssa-mir-1338

Stem-loop ssa-mir-1338


Accession
MI0026479
Description
Salmo salar ssa-mir-1338 precursor miRNA
Gene family
MIPF0000805; mir-1388

Literature search
2 open access papers mention ssa-mir-1338
(9 sentences)

Sequence

AGGACUGUCCAACCUGAGAAUggugacuuuaggcucaAUCUCAGGUUCGUCAGCCCAUG
.((.(((.(.(((((((((.((((........)).)).))))))))).).))).))...

Structure
--A  A   U C         A  -  gac 
   GG CUG C AACCUGAGA Ug gu   u
   || ||| | ||||||||| || ||    
   CC GAC G UUGGACUCU ac cg   u
GUA  C   U C         A  u  gau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-1338-5p

Accession MIMAT0032335
Description Salmo salar ssa-miR-1338-5p mature miRNA
Sequence 1 - AGGACUGUCCAACCUGAGAAU - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-1338-3p

Accession MIMAT0032336
Description Salmo salar ssa-miR-1338-3p mature miRNA
Sequence 38 - AUCUCAGGUUCGUCAGCCCAUG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482