miRBase entry: ssa-mir-133b-1

Stem-loop ssa-mir-133b-1


Accession
MI0026481
Description
Salmo salar ssa-mir-133b-1 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

GCUGGUCAAACGGAACCAAGUCagguguuuuagugaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((..........)))..)))))).)).))..)))))).

Structure
-      CA  C  A      --   ggug 
 GCUGGU  AA GG ACCAAG  UCa    u
 ||||||  || || ||||||  |||     
 CGACCA  UU CC UGGUUU  agu    u
U      AC  C  C      gg   gauu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-133b-5p

Accession MIMAT0032339
Description Salmo salar ssa-miR-133b-5p mature miRNA
Sequence 1 - GCUGGUCAAACGGAACCAAGUC - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-133b-3p

Accession MIMAT0032340
Description Salmo salar ssa-miR-133b-3p mature miRNA
Sequence 39 - UUUGGUCCCCUUCAACCAGCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482