Stem-loop ssa-mir-135a

Accession

MI0026485

Description

Salmo salar ssa-mir-135a precursor miRNA

Gene family

MIPF0000028; mir-135

Literature search

1 open access papers mention ssa-mir-135a
(5 sentences)

Sequence

UAUGGCUUUUUAUUCCUAUCUGAcugcguugaggguucaUAUAGGGAUGGAAGCCAUGCA
((((((((((.((((((((.(((((........)).))).))))))))))))))))))..

Structure

--          U        C   -  gcg 
  UAUGGCUUUU AUUCCUAU UGA cu   u
  |||||||||| |||||||| ||| ||    
  GUACCGAAGG UAGGGAUA acu gg   u
AC          -        U   u  gag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-135a-5p

• Accession: MIMAT0032342
• Description: Salmo salar ssa-miR-135a-5p mature miRNA
• Sequence: 1 - UAUGGCUUUUUAUUCCUAUCUGA - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-135a-3p

• Accession: MIMAT0032343
• Description: Salmo salar ssa-miR-135a-3p mature miRNA
• Sequence: 40 - UAUAGGGAUGGAAGCCAUGCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482