miRBase entry: ssa-mir-142a-1

Stem-loop ssa-mir-142a-1


Accession
MI0026500
Description
Salmo salar ssa-mir-142a-1 precursor miRNA
Gene family
MIPF0000084; mir-142


Sequence

CAUAAAGUAGAAAGCACUACUaaacuccucaccacaguguAGUGUUUCCUACUUUAUGGAUG
((((((((((.(((((((((..................))))))))).))))))))))....

Structure
----          A         Uaaacucc 
    CAUAAAGUAG AAGCACUAC        u
    |||||||||| |||||||||         
    GUAUUUCAUC UUUGUGAug        c
GUAG          C         ugacacca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-142a-5p

Accession MIMAT0032361
Description Salmo salar ssa-miR-142a-5p mature miRNA
Sequence 1 - CAUAAAGUAGAAAGCACUACU - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-142a-3p

Accession MIMAT0032362
Description Salmo salar ssa-miR-142a-3p mature miRNA
Sequence 41 - AGUGUUUCCUACUUUAUGGAUG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482