miRBase entry: ssa-mir-143

Stem-loop ssa-mir-143


Accession
MI0026503
Description
Salmo salar ssa-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143


Sequence

GGUGCAGUGCUGCAUCUCUGGUcaauugggagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..

Structure
-- G         G      U  -  aa 
  G UGCAGUGCU CAUCUC GG Uc  u
  | ||||||||| |||||| || ||   
  C AUGUCACGA GUAGAG cu ag  u
CU G         A      U  g  gg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-143-5p

Accession MIMAT0032365
Description Salmo salar ssa-miR-143-5p mature miRNA
Sequence 1 - GGUGCAGUGCUGCAUCUCUGGU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-143-3p

Accession MIMAT0032366
Description Salmo salar ssa-miR-143-3p mature miRNA
Sequence 35 - UGAGAUGAAGCACUGUAGCUC - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482