miRBase entry: ssa-mir-148a

Stem-loop ssa-mir-148a


Accession
MI0026513
Description
Salmo salar ssa-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
1 open access papers mention ssa-mir-148a
(5 sentences)

Sequence

AAGUUCUGUGAUACACUUCGACUcuaauuguuugcagUCAGUGCAUUACAGAACUUUGU
((((((((((((.((((..((((.(((....))).)))))))).))))))))))))...

Structure
---            A    UC    c   u 
   AAGUUCUGUGAU CACU  GACU uaa u
   |||||||||||| ||||  |||| |||  
   UUCAAGACAUUA GUGA  CUga guu g
UGU            C    --    c   u 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-148a-5p

Accession MIMAT0032379
Description Salmo salar ssa-miR-148a-5p mature miRNA
Sequence 1 - AAGUUCUGUGAUACACUUCGACU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-148a-3p

Accession MIMAT0032380
Description Salmo salar ssa-miR-148a-3p mature miRNA
Sequence 38 - UCAGUGCAUUACAGAACUUUGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482