miRBase entry: ssa-mir-148b

Stem-loop ssa-mir-148b


Accession
MI0026514
Description
Salmo salar ssa-mir-148b precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
1 open access papers mention ssa-mir-148b
(1 sentences)

Sequence

AAGUUCGGUGAUACACUUCGACUcuaauuguuugcagUCAGUGCAUUACAGAACUUUAU
((((((.(((((.((((..((((.(((....))).)))))))).))))).))))))...

Structure
---      G     A    UC    c   u 
   AAGUUC GUGAU CACU  GACU uaa u
   |||||| ||||| ||||  |||| |||  
   UUCAAG CAUUA GUGA  CUga guu g
UAU      A     C    --    c   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-148b-5p

Accession MIMAT0032381
Description Salmo salar ssa-miR-148b-5p mature miRNA
Sequence 1 - AAGUUCGGUGAUACACUUCGACU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-148b-3p

Accession MIMAT0032382
Description Salmo salar ssa-miR-148b-3p mature miRNA
Sequence 38 - UCAGUGCAUUACAGAACUUUAU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482