Stem-loop ssa-mir-152

Accession

MI0026516

Description

Salmo salar ssa-mir-152 precursor miRNA

Gene family

MIPF0000056; mir-148

Literature search

2 open access papers mention ssa-mir-152
(6 sentences)

Sequence

CAAGUUCUGUGAUACACUUAGGCUcugagucugugguagUCAGUGCAUAACAGAACUUUGg
.(((((((((.((.((((..((((((........)).)))))))).)).)))))))))...

Structure

--C         G  A    UA    -  gag 
   AAGUUCUGU AU CACU  GGCU cu   u
   ||||||||| || ||||  |||| ||    
   UUCAAGACA UA GUGA  CUga gg   c
gGU         A  C    --    u  ugu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-152-5p

• Accession: MIMAT0032385
• Description: Salmo salar ssa-miR-152-5p mature miRNA
• Sequence: 1 - CAAGUUCUGUGAUACACUUAGGCU - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-152-3p

• Accession: MIMAT0032386
• Description: Salmo salar ssa-miR-152-3p mature miRNA
• Sequence: 40 - UCAGUGCAUAACAGAACUUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482