Stem-loop ssa-mir-155-1

Accession

MI0026520

Description

Salmo salar ssa-mir-155-1 precursor miRNA

Gene family

MIPF0000157; mir-155

Literature search

2 open access papers mention ssa-mir-155-1
(19 sentences)

Sequence

UUAAUGCUAAUCGUGAUAGGGGUucuguuguuuaaaaaaaagaCACCUAGCAUGUAAGCAUUAGC
((((((((...((((.((((.((.((.((........)).)))).)))).))))..)))))))).

Structure

-        AAU    A    G  u  g  guu 
 UUAAUGCU   CGUG UAGG GU cu uu   u
 ||||||||   |||| |||| || || ||    
 GAUUACGA   GUAC AUCC Ca ga aa   a
C        -AU    G    A  -  a  aaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-155-5p

• Accession: MIMAT0032392
• Description: Salmo salar ssa-miR-155-5p mature miRNA
• Sequence: 1 - UUAAUGCUAAUCGUGAUAGGGGU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-155-3p

• Accession: MIMAT0032393
• Description: Salmo salar ssa-miR-155-3p mature miRNA
• Sequence: 44 - CACCUAGCAUGUAAGCAUUAGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482