miRBase entry: ssa-mir-15c-2

Stem-loop ssa-mir-15c-2


Accession
MI0026525
Description
Salmo salar ssa-mir-15c-2 precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
1 open access papers mention ssa-mir-15c-2
(3 sentences)

Sequence

UAGCAGCGCAUCAUGGUUUGAaacaauguuggaaaggugCGAACCAUCAUUUGCUGCUUUA
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))...

Structure
--U       C  C        Aa  aa gu 
   AGCAGCG AU AUGGUUUG  ac  u  u
   ||||||| || ||||||||  ||  |   
   UCGUCGU UA UACCAAGC  ug  a  g
AUU       U  C        -g  ga ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-15c-5p

Accession MIMAT0032398
Description Salmo salar ssa-miR-15c-5p mature miRNA
Sequence 1 - UAGCAGCGCAUCAUGGUUUGA - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-15c-2-3p

Accession MIMAT0032400
Description Salmo salar ssa-miR-15c-2-3p mature miRNA
Sequence 40 - CGAACCAUCAUUUGCUGCUUUA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482