miRBase entry: ssa-mir-16a-1

Stem-loop ssa-mir-16a-1


Accession
MI0026528
Description
Salmo salar ssa-mir-16a-1 precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
1 open access papers mention ssa-mir-16a-1
(1 sentences)

Sequence

UAGCAGCACGUAAAUAUUGGAGuuaaaacuacugcugaagccuCCAGUAUUGUUCGUGCUGCUGA
((((((((((..((((((((((...................))))))))))...)))))))))).

Structure
-          -UA          uuaaaacu 
 UAGCAGCACG   AAUAUUGGAG        a
 ||||||||||   ||||||||||        c
 GUCGUCGUGC   UUAUGACCuc        u
A          UUG          cgaagucg 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-16a-5p

Accession MIMAT0032405
Description Salmo salar ssa-miR-16a-5p mature miRNA
Sequence 1 - UAGCAGCACGUAAAUAUUGGAG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-16a-3p

Accession MIMAT0032406
Description Salmo salar ssa-miR-16a-3p mature miRNA
Sequence 44 - CCAGUAUUGUUCGUGCUGCUGA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482