miRBase entry: ssa-mir-1788

Stem-loop ssa-mir-1788


Accession
MI0026532
Description
Salmo salar ssa-mir-1788 precursor miRNA
Gene family
MIPF0000792; mir-1788


Sequence

GGCUUGUUUUAAGUUGCCUGcgaccuguuuaaagacuCAGGCAGCUAAAGCAAGUCUG
(((((((((((.((((((((.(..((......)).).)))))))))))))))))))..

Structure
--           A        c ac  gu 
  GGCUUGUUUUA GUUGCCUG g  cu  u
  ||||||||||| |||||||| |  ||   
  CUGAACGAAAU CGACGGAC c  ga  u
GU           -        u -a  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-1788-5p

Accession MIMAT0032412
Description Salmo salar ssa-miR-1788-5p mature miRNA
Sequence 1 - GGCUUGUUUUAAGUUGCCUG - 20
Evidence experimental
Illumina [1]

Mature ssa-miR-1788-3p

Accession MIMAT0032413
Description Salmo salar ssa-miR-1788-3p mature miRNA
Sequence 38 - CAGGCAGCUAAAGCAAGUCUG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482