miRBase entry: ssa-mir-17-1

Stem-loop ssa-mir-17-1


Accession
MI0026535
Description
Salmo salar ssa-mir-17-1 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
2 open access papers mention ssa-mir-17-1
(9 sentences)

Sequence

CAAAGUGCUUACAGUGCAGGUAGucaucuaauaucuaCUGCAGUGAAGGCACUUUAAGCA
.(((((((((.((.(((((.(((...........)))))))).)).))))))))).....

Structure
----C         A  G     G   ucau 
     AAAGUGCUU CA UGCAG UAG    c
     ||||||||| || ||||| |||    u
     UUUCACGGA GU ACGUC auc    a
ACGAA         A  G     -   uaua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-17-5p

Accession MIMAT0032414
Description Salmo salar ssa-miR-17-5p mature miRNA
Sequence 1 - CAAAGUGCUUACAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-17-3p

Accession MIMAT0032416
Description Salmo salar ssa-miR-17-3p mature miRNA
Sequence 38 - CUGCAGUGAAGGCACUUUAAGCA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482