Stem-loop ssa-mir-181a-1

Accession

MI0026536

Description

Salmo salar ssa-mir-181a-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

4 open access papers mention ssa-mir-181a-1
(15 sentences)

Sequence

AACAUUCAACGCUGUCGGUGAGUuugagcaucuguccaaaACCAUCGACCGUUAAAUGUACC
.(((((.((((..(((((((..((((.((....)).))))..))))))))))).)))))...

Structure

--A     C    CU       AG    a  a 
   ACAUU AACG  GUCGGUG  Uuug gc u
   ||||| ||||  |||||||  |||| ||  
   UGUAA UUGC  CAGCUAC  aaac ug c
CCA     A    --       CA    c  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-181a-5p

• Accession: MIMAT0032417
• Description: Salmo salar ssa-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAGU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-181a-1-3p

• Accession: MIMAT0032418
• Description: Salmo salar ssa-miR-181a-1-3p mature miRNA
• Sequence: 41 - ACCAUCGACCGUUAAAUGUACC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482