miRBase entry: ssa-mir-181a-2

Stem-loop ssa-mir-181a-2


Accession
MI0026537
Description
Salmo salar ssa-mir-181a-2 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
4 open access papers mention ssa-mir-181a-2
(15 sentences)

Sequence

AACAUUCAACGCUGUCGGUGAGUuugagccucugacagaaACCAUCGACCGUUGACUGUACC
.(((.((((((..(((((((.((((.............))))))))))))))))).)))...

Structure
--A   U      CU       A    gagcc 
   ACA UCAACG  GUCGGUG GUuu     u
   ||| ||||||  ||||||| ||||     c
   UGU AGUUGC  CAGCUAC CAaa     u
CCA   C      --       -    gacag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-181a-5p

Accession MIMAT0032417
Description Salmo salar ssa-miR-181a-5p mature miRNA
Sequence 1 - AACAUUCAACGCUGUCGGUGAGU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-181a-2-3p

Accession MIMAT0032419
Description Salmo salar ssa-miR-181a-2-3p mature miRNA
Sequence 41 - ACCAUCGACCGUUGACUGUACC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482