Stem-loop ssa-mir-18a

Accession

MI0026547

Description

Salmo salar ssa-mir-18a precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention ssa-mir-18a
(4 sentences)

Sequence

UAAGGUGCAUCUAGUGUAGUUAgugaaauagucuaguaucuACUGCCCUAGUUGCUCCUUCUGGC
.((((.(((.((((.(((((.((................))))))).)))).))).)))).....

Structure

----U    U   U    U     U  ugaaaua 
     AAGG GCA CUAG GUAGU Ag       g
     |||| ||| |||| ||||| ||        
     UUCC CGU GAUC CGUCA uc       u
CGGUC    U   U    C     -  uaugauc 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-18a-5p

• Accession: MIMAT0032432
• Description: Salmo salar ssa-miR-18a-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGUAGUUA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-18a-3p

• Accession: MIMAT0032433
• Description: Salmo salar ssa-miR-18a-3p mature miRNA
• Sequence: 42 - ACUGCCCUAGUUGCUCCUUCUGGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482