miRBase entry: ssa-mir-190a

Stem-loop ssa-mir-190a


Accession
MI0026549
Description
Salmo salar ssa-mir-190a precursor miRNA
Gene family
MIPF0000076; mir-190

Literature search
1 open access papers mention ssa-mir-190a
(6 sentences)

Sequence

UGAUAUGUUUGAUAUAUUAGGUUGuuauucaguccaACUAUAUAUCAAACAUAUUCCU
.((((((((((((((((..(((((..........)))))))))))))))))))))...

Structure
--U                UA     uuau 
   GAUAUGUUUGAUAUAU  GGUUG    u
   ||||||||||||||||  |||||     
   UUAUACAAACUAUAUA  UCAac    c
UCC                --     cuga 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-190a-5p

Accession MIMAT0032436
Description Salmo salar ssa-miR-190a-5p mature miRNA
Sequence 1 - UGAUAUGUUUGAUAUAUUAGGUUG - 24
Evidence experimental
Illumina [1]

Mature ssa-miR-190a-3p

Accession MIMAT0032437
Description Salmo salar ssa-miR-190a-3p mature miRNA
Sequence 37 - ACUAUAUAUCAAACAUAUUCCU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482