miRBase entry: ssa-mir-192a-1

Stem-loop ssa-mir-192a-1


Accession
MI0026551
Description
Salmo salar ssa-mir-192a-1 precursor miRNA
Gene family
MIPF0000063; mir-192

Literature search
1 open access papers mention ssa-mir-192a-1
(1 sentences)

Sequence

AUGACCUAUGAAUUGACAGCCaguguuuugcaacacgacugCCUGUCAGUUAUGUAGGCCACU
.((.(((((.(((((((((.((((((........)).)))).)))))))))..))))).))..

Structure
-A  A     -G         C    -  uuu 
  UG CCUAU  AAUUGACAG Cagu gu   g
  || |||||  ||||||||| |||| ||    
  AC GGAUG  UUGACUGUC guca ca   c
UC  C     UA         C    g  caa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-192a-5p

Accession MIMAT0032440
Description Salmo salar ssa-miR-192a-5p mature miRNA
Sequence 1 - AUGACCUAUGAAUUGACAGCC - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-192a-3p

Accession MIMAT0032441
Description Salmo salar ssa-miR-192a-3p mature miRNA
Sequence 42 - CCUGUCAGUUAUGUAGGCCACU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482