Stem-loop ssa-mir-193

Accession

MI0026554

Description

Salmo salar ssa-mir-193 precursor miRNA

Gene family

MIPF0000082; mir-193

Literature search

2 open access papers mention ssa-mir-193
(2 sentences)

Sequence

CGGGAUCUUGGGGGCGAGAUGaguuugaucagaauccAACUGGCCCGCAAAGUCCCGCU
((((((.(((.((((.((.((.((((.....)))).)).)).)))).))).))))))..

Structure

--      C   G    G  A  a    g 
  CGGGAU UUG GGGC AG UG guuu a
  |||||| ||| |||| || || |||| u
  GCCCUG AAC CCCG UC Ac uaag c
UC      A   G    G  A  c    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-193-5p

• Accession: MIMAT0032445
• Description: Salmo salar ssa-miR-193-5p mature miRNA
• Sequence: 1 - CGGGAUCUUGGGGGCGAGAUG - 21
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-193-3p

• Accession: MIMAT0032446
• Description: Salmo salar ssa-miR-193-3p mature miRNA
• Sequence: 38 - AACUGGCCCGCAAAGUCCCGCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482