Stem-loop ssa-mir-196a-1

Accession

MI0026559

Description

Salmo salar ssa-mir-196a-1 precursor miRNA

Gene family

MIPF0000031; mir-196

Sequence

UAGGUAGUUUCAUGUUGUUGGGauugacuuccuggcUCGGCAACAAAAAACUGCCUUGA
.(((((((((..((((((((((...(.....)...))))))))))..)))))))))...

Structure

--U         CA          auu a 
   AGGUAGUUU  UGUUGUUGGG   g c
   |||||||||  ||||||||||   | u
   UCCGUCAAA  ACAACGGCUc   c u
AGU         AA          ggu c 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-196a-5p

• Accession: MIMAT0032453
• Description: Salmo salar ssa-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-196a-1-3p

• Accession: MIMAT0032454
• Description: Salmo salar ssa-miR-196a-1-3p mature miRNA
• Sequence: 37 - UCGGCAACAAAAAACUGCCUUGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482