Stem-loop ssa-mir-196a-2

Accession

MI0026560

Description

Salmo salar ssa-mir-196a-2 precursor miRNA

Gene family

MIPF0000031; mir-196

Sequence

UAGGUAGUUUCAUGUUGUUGGGauccauuuucuaccuCUACAACACGAAACUGUCUGA
(((((((((((.((((((.(((.............))).)))))).))))))))))).

Structure

-           A      U   aucca 
 UAGGUAGUUUC UGUUGU GGG     u
 ||||||||||| |||||| |||     u
 GUCUGUCAAAG ACAACA Cuc     u
A           C      U   caucu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-196a-5p

• Accession: MIMAT0032453
• Description: Salmo salar ssa-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-196a-2-3p

• Accession: MIMAT0032455
• Description: Salmo salar ssa-miR-196a-2-3p mature miRNA
• Sequence: 38 - CUACAACACGAAACUGUCUGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482