miRBase entry: ssa-mir-19c-2

Stem-loop ssa-mir-19c-2


Accession
MI0026573
Description
Salmo salar ssa-mir-19c-2 precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

AGUUUUGCUGCUUUGCAUCCCGCuuaaagaaaaguuugcUGUGCAAAUCCAUGCAAAACUG
((((((((((.(((((((...((((......)))).....)))))))..)).)))))))).

Structure
-        -  -C       --CCC    aa 
 AGUUUUGC UG  UUUGCAU     GCuu  a
 |||||||| ||  |||||||     ||||   
 UCAAAACG AC  AAACGUG     ugaa  g
G        U  CU       Ucguu    aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-19c-5p

Accession MIMAT0032465
Description Salmo salar ssa-miR-19c-5p mature miRNA
Sequence 1 - AGUUUUGCUGCUUUGCAUCCCGC - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-19c-3p

Accession MIMAT0032466
Description Salmo salar ssa-miR-19c-3p mature miRNA
Sequence 40 - UGUGCAAAUCCAUGCAAAACUG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482