Stem-loop ssa-mir-200b-1

Accession

MI0026584

Description

Salmo salar ssa-mir-200b-1 precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

CAUCUUACCUGACAGUGCUGGAuuguacaaaaaaguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((..............)))).))))))).))))).))))..

Structure

--    -     U       C    uuguac 
  CAUC UUACC GACAGUG UGGA      a
  |||| ||||| ||||||| ||||       
  GUAG AAUGG CUGUCAC AUcu      a
UU    C     U       A    ugaaaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-200b-5p

• Accession: MIMAT0032479
• Description: Salmo salar ssa-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACCUGACAGUGCUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-200b-3p

• Accession: MIMAT0032480
• Description: Salmo salar ssa-miR-200b-3p mature miRNA
• Sequence: 39 - UAACACUGUCUGGUAACGAUGUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482