Stem-loop ssa-mir-20a-2

Accession

MI0026602

Description

Salmo salar ssa-mir-20a-2 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention ssa-mir-20a-2
(6 sentences)

Sequence

UAAAGUGCUUAUAGUGCAGGUAGuuuuauggauaccuACUGCAGUGUGAGCACUUGAAGU
..(((((((((((.(((((.(((............)))))))).))))))))))).....

Structure

---UA           G     G   uuuua 
     AAGUGCUUAUA UGCAG UAG     u
     ||||||||||| ||||| |||      
     UUCACGAGUGU ACGUC Auc     g
UGAAG           G     -   cauag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-20a-5p

• Accession: MIMAT0032502
• Description: Salmo salar ssa-miR-20a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-20a-2-3p

• Accession: MIMAT0032504
• Description: Salmo salar ssa-miR-20a-2-3p mature miRNA
• Sequence: 38 - ACUGCAGUGUGAGCACUUGAAGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482