miRBase entry: ssa-mir-20b

Stem-loop ssa-mir-20b


Accession
MI0026604
Description
Salmo salar ssa-mir-20b precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
1 open access papers mention ssa-mir-20b
(3 sentences)

Sequence

CAAAGUGCUCACAGUGCAGGUAguuuaaaugaaccuACUGCAGUGUGUGCACUUCAAGU
..((((((.((((.(((((...((((....))))...))))).)))).)))))).....

Structure
---CA      U    G     GUA    a 
     AAGUGC CACA UGCAG   guuu a
     |||||| |||| |||||   ||||  
     UUCACG GUGU ACGUC   caag a
UGAAC      U    G     Auc    u 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-20b-5p

Accession MIMAT0032506
Description Salmo salar ssa-miR-20b-5p mature miRNA
Sequence 1 - CAAAGUGCUCACAGUGCAGGUA - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-20b-3p

Accession MIMAT0032507
Description Salmo salar ssa-miR-20b-3p mature miRNA
Sequence 37 - ACUGCAGUGUGUGCACUUCAAGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482