Stem-loop ssa-mir-212a-1

Accession

MI0026607

Description

Salmo salar ssa-mir-212a-1 precursor miRNA

Gene family

MIPF0000065; mir-132

Sequence

ACCUUGGCUUUAGACUGCUUACUgcuugaaacagucucacaguuacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.(((((((((((.......))).))...))))))))))))).))))).))..

Structure

-A  U     U       C      ---  -   aa 
  CC UGGCU UAGACUG UUACUg   cu uga  c
  || ||||| ||||||| ||||||   || |||  a
  GG ACUGA AUCUGAC AAUgac   ga acu  g
UC  U     C       -      auu  c   cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-212a-5p

• Accession: MIMAT0032510
• Description: Salmo salar ssa-miR-212a-5p mature miRNA
• Sequence: 1 - ACCUUGGCUUUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-212a-3p

• Accession: MIMAT0032511
• Description: Salmo salar ssa-miR-212a-3p mature miRNA
• Sequence: 49 - UAACAGUCUACAGUCAUGGCU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482