Stem-loop ssa-mir-2188

Accession

MI0026617

Description

Salmo salar ssa-mir-2188 precursor miRNA

Gene family

MIPF0000812; mir-2188

Literature search

2 open access papers mention ssa-mir-2188
(18 sentences)

Sequence

AAGGUCCAACCUCACAUGUCCUguguggcugaaggaagGCUGUGUGAGGUCAGACCUAUC
.(((((..((((((((((.(((.(.(......).).))).))))))))))..)))))...

Structure

--A     CA          U   g g gg 
   AGGUC  ACCUCACAUG CCU u u  c
   |||||  |||||||||| ||| | |   
   UCCAG  UGGAGUGUGU Gga g a  u
CUA     AC          C   a g ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-2188-5p

• Accession: MIMAT0032522
• Description: Salmo salar ssa-miR-2188-5p mature miRNA
• Sequence: 1 - AAGGUCCAACCUCACAUGUCCU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-2188-3p

• Accession: MIMAT0032523
• Description: Salmo salar ssa-miR-2188-3p mature miRNA
• Sequence: 39 - GCUGUGUGAGGUCAGACCUAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482