Stem-loop ssa-mir-218-1

Accession

MI0026618

Description

Salmo salar ssa-mir-218-1 precursor miRNA

Gene family

MIPF0000026; mir-218

Sequence

UUGUGCUUGAUCUAACCAUGUGccgccgccuacacucgccucACAUGGUUCCGUCAAGCACCAGG
..(((((((((..(((((((((..((...........))..)))))))))..)))))))))....

Structure

--UU         CU         cc  cgcc 
    GUGCUUGAU  AACCAUGUG  gc    u
    |||||||||  |||||||||  ||    a
    CACGAACUG  UUGGUACAc  cg    c
GGAC         CC         uc  cuca 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-218-5p

• Accession: MIMAT0032524
• Description: Salmo salar ssa-miR-218-5p mature miRNA
• Sequence: 1 - UUGUGCUUGAUCUAACCAUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-218-3p

• Accession: MIMAT0032525
• Description: Salmo salar ssa-miR-218-3p mature miRNA
• Sequence: 43 - ACAUGGUUCCGUCAAGCACCAGG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482