miRBase entry: ssa-mir-219a-2

Stem-loop ssa-mir-219a-2


Accession
MI0026621
Description
Salmo salar ssa-mir-219a-2 precursor miRNA
Gene family
MIPF0000044; mir-219


Sequence

UGAUUGUCCAAACGCAAUUCUUGagcaaaaucaaacgaaaccccaAGAAUUGUGCAUGGACAUCUGU
.(((.(((((..(((((((((((....................)))))))))))..))))))))...

Structure
--U   U     AA           agcaaaauc 
   GAU GUCCA  CGCAAUUCUUG         a
   ||| |||||  |||||||||||          
   CUA CAGGU  GUGUUAAGAac         a
UGU   -     AC           cccaaagca 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-219a-5p

Accession MIMAT0032526
Description Salmo salar ssa-miR-219a-5p mature miRNA
Sequence 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-219a-3p

Accession MIMAT0032527
Description Salmo salar ssa-miR-219a-3p mature miRNA
Sequence 46 - AGAAUUGUGCAUGGACAUCUGU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482