miRBase entry: ssa-mir-219b-1

Stem-loop ssa-mir-219b-1


Accession
MI0026622
Description
Salmo salar ssa-mir-219b-1 precursor miRNA
Gene family
MIPF0000044; mir-219


Sequence

UGAUUGUCCAAACGCAAUUCUUGugaaauuuuaaacuacccgAGAAUUGUAUCUGGACAUCUGU
.(((.(((((...((((((((((.(..............)))))))))))...))))))))...

Structure
--U   U     AAC          u aaauuu 
   GAU GUCCA   GCAAUUCUUG g      u
   ||| |||||   |||||||||| |       
   CUA CAGGU   UGUUAAGAgc c      a
UGU   -     CUA          - caucaa 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-219b-5p

Accession MIMAT0032528
Description Salmo salar ssa-miR-219b-5p mature miRNA
Sequence 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-219b-3p

Accession MIMAT0032529
Description Salmo salar ssa-miR-219b-3p mature miRNA
Sequence 43 - AGAAUUGUAUCUGGACAUCUGU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482