miRBase entry: ssa-mir-22a

Stem-loop ssa-mir-22a


Accession
MI0026633
Description
Salmo salar ssa-mir-22a precursor miRNA
Gene family
MIPF0000053; mir-22


Sequence

AGUUCUUCACUGGCAAGCUUUAuguccuuguguaccaacuaAAGCUGCCAGCUGAAGAACUGU
(((((((((((((((.((((((.((............)))))))))))))).)))))))))..

Structure
--         -      A      u  ccuug 
  AGUUCUUCA CUGGCA GCUUUA gu     u
  ||||||||| |||||| |||||| ||      
  UCAAGAAGU GACCGU CGAAau ca     g
UG         C      -      -  accau 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-22a-5p

Accession MIMAT0032544
Description Salmo salar ssa-miR-22a-5p mature miRNA
Sequence 1 - AGUUCUUCACUGGCAAGCUUUA - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-22a-3p

Accession MIMAT0032545
Description Salmo salar ssa-miR-22a-3p mature miRNA
Sequence 42 - AAGCUGCCAGCUGAAGAACUGU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482