miRBase entry: ssa-mir-23a-1

Stem-loop ssa-mir-23a-1


Accession
MI0026638
Description
Salmo salar ssa-mir-23a-1 precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
2 open access papers mention ssa-mir-23a-1
(4 sentences)

Sequence

GGAUUCCUGGCAGAGUGAUUUGauauuguaucauaaaAUCACAUUGCCAGGGAUUUCC
.((((((((((((.(((((((((((...)))))...)))))).))))))))))))...

Structure
--G            A      ---     u 
   GAUUCCUGGCAG GUGAUU   UGaua  
   |||||||||||| ||||||   ||||| u
   UUAGGGACCGUU CACUAa   acuau  
CCU            A      aau     g 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-23a-3p

Accession MIMAT0032549
Description Salmo salar ssa-miR-23a-3p mature miRNA
Sequence 38 - AUCACAUUGCCAGGGAUUUCC - 58
Evidence experimental
Illumina [1]

Mature ssa-miR-23a-5p

Accession MIMAT0032551
Description Salmo salar ssa-miR-23a-5p mature miRNA
Sequence 1 - GGAUUCCUGGCAGAGUGAUUUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482