miRBase entry: ssa-mir-27a-1

Stem-loop ssa-mir-27a-1


Accession
MI0026657
Description
Salmo salar ssa-mir-27a-1 precursor miRNA
Gene family
MIPF0000036; mir-27


Sequence

AGGACUUAGCCAGCUUUGUGAACagaucugugaaagcccaugUUCACAGUGGCUAAGUUCCGCU
.(((((((((((...(((((((((...((.....))....))))))))))))))))))))....

Structure
---A           GCU         -gau  g 
    GGACUUAGCCA   UUGUGAACa    cu u
    |||||||||||   |||||||||    || g
    CUUGAAUCGGU   GACACUUgu    ga a
UCGC           ---         accc  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-27a-5p

Accession MIMAT0032573
Description Salmo salar ssa-miR-27a-5p mature miRNA
Sequence 1 - AGGACUUAGCCAGCUUUGUGAAC - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-27a-3p

Accession MIMAT0032574
Description Salmo salar ssa-miR-27a-3p mature miRNA
Sequence 43 - UUCACAGUGGCUAAGUUCCGCU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482