miRBase entry: ssa-mir-29b-3

Stem-loop ssa-mir-29b-3


Accession
MI0026667
Description
Salmo salar ssa-mir-29b-3 precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

ACCGAUUUCUUUUGGUGUUCAGAgucuuguuguguuucUAGCACCAUUUGAAAUCGGUUA
(((((((((...(((((((.((((.(.......).)))))))))))...)))))))))..

Structure
--         UUU       C    u uu 
  ACCGAUUUC   UGGUGUU AGAg c  g
  |||||||||   ||||||| |||| |  u
  UGGCUAAAG   ACCACGA Ucuu g  u
AU         UUU       -    u ug 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-29b-3p

Accession MIMAT0032586
Description Salmo salar ssa-miR-29b-3p mature miRNA
Sequence 39 - UAGCACCAUUUGAAAUCGGUUA - 60
Evidence experimental
Illumina [1]

Mature ssa-miR-29b-3-5p

Accession MIMAT0032588
Description Salmo salar ssa-miR-29b-3-5p mature miRNA
Sequence 1 - ACCGAUUUCUUUUGGUGUUCAGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482