miRBase entry: ssa-mir-301a-1

Stem-loop ssa-mir-301a-1


Accession
MI0026670
Description
Salmo salar ssa-mir-301a-1 precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

UUUGACAAUGUUGCACUACUguaccauucauucuagCAGUGCAAUAGUAUUGUCAUAGC
..(((((((((((((((.(((............))).))))))))...)))))))....

Structure
--UU       ---        A   uacca 
    UGACAAU   GUUGCACU CUg     u
    |||||||   |||||||| |||      
    ACUGUUA   UAACGUGA gau     u
CGAU       UGA        C   cuuac 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-301a-5p

Accession MIMAT0032592
Description Salmo salar ssa-miR-301a-5p mature miRNA
Sequence 1 - UUUGACAAUGUUGCACUACU - 20
Evidence experimental
Illumina [1]

Mature ssa-miR-301a-3p

Accession MIMAT0032593
Description Salmo salar ssa-miR-301a-3p mature miRNA
Sequence 37 - CAGUGCAAUAGUAUUGUCAUAGC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482