miRBase entry: ssa-mir-301d

Stem-loop ssa-mir-301d


Accession
MI0026673
Description
Salmo salar ssa-mir-301d precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

CUCUGACUUCAUUGCACUACUguauuggacagcuagCAGUGCAAUAGUAUUGUCAAAGC
((.((((..(((((((((.((((........)).)).)))))))).)....)))).)).

Structure
-  C    --UU -        A  -  auu 
 CU UGAC    C AUUGCACU CU gu   g
 || ||||    | |||||||| || ||    
 GA ACUG    G UAACGUGA ga cg   g
C  A    UUAU A        C  u  aca 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-301d-5p

Accession MIMAT0032598
Description Salmo salar ssa-miR-301d-5p mature miRNA
Sequence 1 - CUCUGACUUCAUUGCACUACU - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-301d-3p

Accession MIMAT0032599
Description Salmo salar ssa-miR-301d-3p mature miRNA
Sequence 37 - CAGUGCAAUAGUAUUGUCAAAGC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482